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2005
 
Ameyar-Zazoua, M., Wisniewska, MB., Bakiri, L., Wagner, EF., Yaniv, M., Weitzman, JB. (2005). AP-1 dimers regulate transcription of the p14/p19ARF tumor suppressor gene. Oncogene. 24(14):2298-306 (abstract)
 
Angelin-Duclos, C., Domenget, C., Kolbus, A., Beug, H., Jurdic, P., Samarut, J. (2005). Thyroid hormone T3 acting through the thyroid hormone alpha receptor is necessary for implementation of erythropoiesis in the neonatal spleen environment in the mouse. Development. 132(5):925-34 (abstract)
 
Ardouin, L., Rolink, AG., Mura, AM., Gommeaux, J., Melchers, F., Busslinger, M., Malissen, M., Malissen, B. (2005). Rapid in vivo analysis of mutant forms of the LAT adaptor using Pax5-Lat double-deficient pro-B cells. Eur J Immunol. 35(3):977-86 (abstract)
 
Asagiri, M., Sato, K., Usami, T., Ochi, S., Nishina, H., Yoshida, H., Morita, I., Wagner, EF., Mak, TW., Serfling, E., Takayanagi, H. (2005). Autoamplification of NFATc1 expression determines its essential role in bone homeostasis. J Exp Med. 202(9):1261-9 (abstract)
 
Bao, S., Miyoshi, N., Okamoto, I., Jenuwein, T., Heard, E., Azim Surani, M. (2005). Initiation of epigenetic reprogramming of the X chromosome in somatic nuclei transplanted to a mouse oocyte. EMBO Rep. 6(8):748-54 (abstract)
 
Besirli, CG., Wagner, EF., Johnson, EM. (2005). The limited role of NH2-terminal c-Jun phosphorylation in neuronal apoptosis: identification of the nuclear pore complex as a potential target of the JNK pathway. J Cell Biol. 170(3):401-11 (abstract)
 
Betschinger, J., Eisenhaber, F., Knoblich, JA. (2005). Phosphorylation-induced autoinhibition regulates the cytoskeletal protein Lethal (2) giant larvae. Curr Biol. 15(3):276-82 (abstract)
 
Bos, R., van Duikeren, S., van Hall, T., Kaaijk, P., Taubert, R., Kyewski, B., Klein, L., Melief, CJ., Offringa, R. (2005). Expression of a natural tumor antigen by thymic epithelial cells impairs the tumor-protective CD4+ T-cell repertoire. Cancer Res. 65(14):6443-9 (abstract)
 
Bouchard, M., Grote, D., Craven, SE., Sun, Q., Steinlein, P., Busslinger, M. (2005). Identification of Pax2-regulated genes by expression profiling of the mid-hindbrain organizer region. Development. 132(11):2633-43 (abstract)
 
Braig, M., Lee, S., Loddenkemper, C., Rudolph, C., Peters, AH., Schlegelberger, B., Stein, H., Dörken, B., Jenuwein, T., Schmitt, CA. (2005). Oncogene-induced senescence as an initial barrier in lymphoma development. Nature. 436(7051):660-5 (abstract)
 
Corvinus, FM., Orth, C., Moriggl, R., Tsareva, SA., Wagner, S., Pfitzner, EB., Baus, D., Kaufmann, R., Huber, LA., Zatloukal, K., Beug, H., Ohlschläger, P., Schütz, A., Halbhuber, KJ., Friedrich, K. (2005). Persistent STAT3 activation in colon cancer is associated with enhanced cell proliferation and tumor growth. Neoplasia. 7(6):545-55 (abstract)
 
David, JP., Mehic, D., Bakiri, L., Schilling, AF., Mandic, V., Priemel, M., Idarraga, MH., Reschke, MO., Hoffmann, O., Amling, M., Wagner, EF. (2005). Essential role of RSK2 in c-Fos-dependent osteosarcoma development. J Clin Invest. 115(3):664-72 (abstract)
 
D'Cruz, LM., Klein, L. (2005). Development and function of agonist-induced CD25+Foxp3+ regulatory T cells in the absence of interleukin 2 signaling. Nat Immunol. 6(11):1152-9 (abstract)
 
Dolznig, H., Kolbus, A., Leberbauer, C., Schmidt, U., Deiner, EM., Müllner, EW., Beug, H. (2005). Expansion and differentiation of immature mouse and human hematopoietic progenitors. Methods Mol Med. 105:323-44 (abstract)
 
Drissen, R., von Lindern, M., Kolbus, A., Driegen, S., Steinlein, P., Beug, H., Grosveld, F., Philipsen, S. (2005). The erythroid phenotype of EKLF-null mice: defects in hemoglobin metabolism and membrane stability. Mol Cell Biol. 25(12):5205-14 (abstract)
 
Dube, P., Herzog, F., Gieffers, C., Sander, B., Riedel, D., Müller, SA., Engel, A., Peters, JM., Stark, H. (2005). Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C. Mol Cell. 20(6):867-79 (abstract)
 
Eger, A., Aigner, K., Sonderegger, S., Dampier, B., Oehler, S., Schreiber, M., Berx, G., Cano, A., Beug, H., Foisner, R. (2005). DeltaEF1 is a transcriptional repressor of E-cadherin and regulates epithelial plasticity in breast cancer cells. Oncogene. 24(14):2375-85 (abstract)
 
Eisenhaber, B., Eisenhaber, F. (2005). Sequence complexity of proteins and its significance in annotation. "Bioinformatics" in the Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Subramaniam, S., ed.).
 
Eisenhaber F. (2005). Discovering Biomolecular Mechanisms with Computational Biology. Georgetown: Landes Biosciences and Eurekah.com.
 
Eisenhaber F. (2005). Bioinformatics: Mystery, Astrology or Service Technology. Preface for "Discovering Biomolecular Mechanisms with Computational Biology" Georgetown: Landes Biosciences and Eurekah.com. :1-10
 
Eisenhaber F. (2005). Prediction of the Protein Function: Two Basic Concepts and One Practical Recipe. Chapter 3 in Georgetown: Landes Biosciences and Eurekah.com. :38-53
 
Fischer, AN., Herrera, B., Mikula, M., Proell, V., Fuchs, E., Gotzmann, J., Schulte-Hermann, R., Beug, H., Mikulits, W. (2005). Integration of Ras subeffector signaling in TGF-beta mediated late stage hepatocarcinogenesis. Carcinogenesis. 26(5):931-42 (abstract)
 
Fraga, MF., Ballestar, E., Villar-Garea, A., Boix-Chornet, M., Espada, J., Schotta, G., Bonaldi, T., Haydon, C., Ropero, S., Petrie, K., Iyer, NG., Pérez-Rosado, A., Calvo, E., Lopez, JA., Cano, A., Calasanz, MJ., Colomer, D., Piris, MA., Ahn, N., Imhof, A., Caldas, C., Jenuwein, T., Esteller, M. (2005). Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer. Nat Genet. 37(4):391-400 (abstract)
 
Fu, L., Patel, MS., Bradley, A., Wagner, EF., Karsenty, G. (2005). The molecular clock mediates leptin-regulated bone formation. Cell. 122(5):803-15 (abstract)
 
Gillardon, F., Steinlein, P., Bürger, E., Hildebrandt, T., Gerner, C. (2005). Phosphoproteome and transcriptome analysis of the neuronal response to a CDK5 inhibitor. Proteomics. 5(5):1299-307 (abstract)
 
Glotzer, M. (2005). The molecular requirements for cytokinesis. Science. 307(5716):1735-9 (abstract)
 
Gonzalo, S., García-Cao, M., Fraga, MF., Schotta, G., Peters, AH., Cotter, SE., Eguía, R., Dean, DC., Esteller, M., Jenuwein, T., Blasco, MA. (2005). Role of the RB1 family in stabilizing histone methylation at constitutive heterochromatin. Nat Cell Biol. 7(4):420-8 (abstract)
 
Grau, S., Baldi, A., Bussani, R., Tian, X., Stefanescu, R., Przybylski, M., Richards, P., Jones, SA., Shridhar, V., Clausen, T., Ehrmann, M. (2005). Implications of the serine protease HtrA1 in amyloid precursor protein processing. Proc Natl Acad Sci U S A. 102(17):6021-6 (abstract)
 
Grebien, F., Dolznig, H., Beug, H., Mullner, EW. (2005). Cell size control: new evidence for a general mechanism. Cell Cycle. 4(3):418-21 (abstract)
 
Gregan, J., Rabitsch, PK., Sakem, B., Csutak, O., Latypov, V., Lehmann, E., Kohli, J., Nasmyth, K. (2005). Novel genes required for meiotic chromosome segregation are identified by a high-throughput knockout screen in fission yeast. Curr Biol. 15(18):1663-9 (abstract)
 
Grillari, J., Ajuh, P., Stadler, G., Löscher, M., Voglauer, R., Ernst, W., Chusainow, J., Eisenhaber, F., Pokar, M., Fortschegger, K., Grey, M., Lamond, AI., Katinger, H. (2005). SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly. Nucleic Acids Res. 33(21):6868-83 (abstract)
 
Groll, M., Bochtler, M., Brandstetter, H., Clausen, T., Huber, R. (2005). Molecular machines for protein degradation. Chembiochem. 6(2):222-56 (abstract)
 
Guse, A., Mishima, M., Glotzer, M. (2005). Phosphorylation of ZEN-4/MKLP1 by aurora B regulates completion of cytokinesis. Curr Biol. 15(8):778-86 (abstract)
 
Hackl, H., Burkard, TR., Sturn, A., Rubio, R., Schleiffer, A., Tian, S., Quackenbush, J., Eisenhaber, F., Trajanoski, Z. (2005). Molecular processes during fat cell development revealed by gene expression profiling and functional annotation. Genome Biol. 6(13):R108 (abstract)
 
Hamant, O., Golubovskaya, I., Meeley, R., Fiume, E., Timofejeva, L., Schleiffer, A., Nasmyth, K., Cande, WZ. (2005). A REC8-dependent plant Shugoshin is required for maintenance of centromeric cohesion during meiosis and has no mitotic functions. Curr Biol. 15(10):948-54 (abstract)
 
Hauf, S., Roitinger, E., Koch, B., Dittrich, CM., Mechtler, K., Peters, JM. (2005). Dissociation of cohesin from chromosome arms and loss of arm cohesion during early mitosis depends on phosphorylation of SA2. PLoS Biol. 3(3):e69 (abstract)
 
Hayer, S., Steiner, G., Görtz, B., Reiter, E., Tohidast-Akrad, M., Amling, M., Hoffmann, O., Redlich, K., Zwerina, J., Skriner, K., Hilberg, F., Wagner, EF., Smolen, JS., Schett, G. (2005). CD44 is a determinant of inflammatory bone loss. J Exp Med. 201(6):903-14 (abstract)
 
Herzog, F., Mechtler, K., Peters, JM. (2005). Identification of cell cycle-dependent phosphorylation sites on the anaphase-promoting complex/cyclosome by mass spectrometry. Methods Enzymol. 398:231-45 (abstract)
 
Herzog, F., Peters, JM. (2005). Large-scale purification of the vertebrate anaphase-promoting complex/cyclosome. Methods Enzymol. 398:175-95 (abstract)
 
Hill, TP., Später, D., Taketo, MM., Birchmeier, W., Hartmann, C. (2005). Canonical Wnt/beta-catenin signaling prevents osteoblasts from differentiating into chondrocytes. Dev Cell. 8(5):727-38 (abstract)
 
Hirota, T., Lipp, JJ., Toh, BH., Peters, JM. (2005). Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin. Nature. 438(7071):1176-80 (abstract)
 
Huber, MA., Kraut, N., Beug, H. (2005). Molecular requirements for epithelial-mesenchymal transition during tumor progression. Curr Opin Cell Biol. 17(5):548-58 (abstract)
 
Ivanov, D., Nasmyth, K. (2005). A topological interaction between cohesin rings and a circular minichromosome. Cell. 122(6):849-60 (abstract)
 
Jerkovic, L., Voegele, AF., Chwatal, S., Kronenberg, F., Radcliffe, CM., Wormald, MR., Lobentanz, EM., Ezeh, B., Eller, P., Dejori, N., Dieplinger, B., Lottspeich, F., Sattler, W., Uhr, M., Mechtler, K., Dwek, RA., Rudd, PM., Baier, G., Dieplinger, H. (2005). Afamin is a novel human vitamin E-binding glycoprotein characterization and in vitro expression. J Proteome Res. 4(3):889-99 (abstract)
 
Kalkhof, S., Ihling, C., Mechtler, K., Sinz, A. (2005). Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex. Anal Chem. 77(2):495-503 (abstract)
 
Kanellopoulou, C., Muljo, SA., Kung, AL., Ganesan, S., Drapkin, R., Jenuwein, T., Livingston, DM., Rajewsky, K. (2005). Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev. 19(4):489-501 (abstract)
 
Keleman, K., Ribeiro, C., Dickson, BJ. (2005). Comm function in commissural axon guidance: cell-autonomous sorting of Robo in vivo. Nat Neurosci. 8(2):156-63 (abstract)
 
Kinoshita, K., Noetzel, TL., Pelletier, L., Mechtler, K., Drechsel, DN., Schwager, A., Lee, M., Raff, JW., Hyman, AA. (2005). Aurora A phosphorylation of TACC3/maskin is required for centrosome-dependent microtubule assembly in mitosis. J Cell Biol. 170(7):1047-55 (abstract)
 
Kitzing, K., Fitzpatrick, TB., Wilken, C., Sawa, J., Bourenkov, GP., Macheroux, P., Clausen, T. (2005). The 1.3 A crystal structure of the flavoprotein YqjM reveals a novel class of Old Yellow Enzymes. J Biol Chem. 280(30):27904-13 (abstract)
 
Klein, L., Emmerich, J., d'Cruz, L., Aschenbrenner, K., Khazaie, K. (2005). Selection and behavior of CD4+ CD25+ T cells in vivo: lessons from T cell receptor transgenic models. Curr Top Microbiol Immunol. 293:73-87 (abstract)
 
Köller, M., Hayer, S., Redlich, K., Ricci, R., David, JP., Steiner, G., Smolen, JS., Wagner, EF., Schett, G. (2005). JNK1 is not essential for TNF-mediated joint disease. Arthritis Res Ther. 7(1):R166-73 (abstract)
 
Koyanagi, M., Baguet, A., Martens, J., Margueron, R., Jenuwein, T., Bix, M. (2005). EZH2 and histone 3 trimethyl lysine 27 associated with Il4 and Il13 gene silencing in Th1 cells. J Biol Chem. 280(36):31470-7 (abstract)
 
Kraft, C., Vodermaier, HC., Maurer-Stroh, S., Eisenhaber, F., Peters, JM. (2005). The WD40 propeller domain of Cdh1 functions as a destruction box receptor for APC/C substrates. Mol Cell. 18(5):543-53 (abstract)
 
Leberbauer, C., Boulmé, F., Unfried, G., Huber, J., Beug, H., Müllner, EW. (2005). Different steroids co-regulate long-term expansion versus terminal differentiation in primary human erythroid progenitors. Blood. 105(1):85-94 (abstract)
 
Leksa, V., Godar, S., Schiller, HB., Fuertbauer, E., Muhammad, A., Slezakova, K., Horejsi, V., Steinlein, P., Weidle, UH., Binder, BR., Stockinger, H. (2005). TGF-beta-induced apoptosis in endothelial cells mediated by M6P/IGFII-R and mini-plasminogen. J Cell Sci. 118(Pt 19):4577-86 (abstract)
 
Martens, JH., O'Sullivan, RJ., Braunschweig, U., Opravil, S., Radolf, M., Steinlein, P., Jenuwein, T. (2005). The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J. 24(4):800-12 (abstract)
 
Maschler, S., Wirl, G., Spring, H., Bredow, DV., Sordat, I., Beug, H., Reichmann, E. (2005). Tumor cell invasiveness correlates with changes in integrin expression and localization. Oncogene. 24(12):2032-41 (abstract)
 
Maurer-Stroh, S., Eisenhaber, F. (2005). Refinement and prediction of protein prenylation motifs. Genome Biol. 6(6):R55 (abstract)
 
McGuinness, BE., Hirota, T., Kudo, NR., Peters, JM., Nasmyth, K. (2005). Shugoshin prevents dissociation of cohesin from centromeres during mitosis in vertebrate cells. PLoS Biol. 3(3):e86 (abstract)
 
Mehic, D., Bakiri, L., Ghannadan, M., Wagner, EF., Tschachler, E. (2005). Fos and jun proteins are specifically expressed during differentiation of human keratinocytes. J Invest Dermatol. 124(1):212-20 (abstract)
 
Moriggl, R., Sexl, V., Kenner, L., Duntsch, C., Stangl, K., Gingras, S., Hoffmeyer, A., Bauer, A., Piekorz, R., Wang, D., Bunting, KD., Wagner, EF., Sonneck, K., Valent, P., Ihle, JN., Beug, H. (2005). Stat5 tetramer formation is associated with leukemogenesis. Cancer Cell. 7(1):87-99 (abstract)
 
Nasmyth, K. (2005). How might cohesin hold sister chromatids together? Philos Trans R Soc Lond B Biol Sci. 360(1455):483-96 (abstract)
 
Nasmyth, K. (2005). How do so few control so many? Cell. 120(6):739-46 (abstract)
 
Nasmyth, K., Haering, CH. (2005). The structure and function of SMC and kleisin complexes. Annu Rev Biochem. 74:595-648 (abstract)
 
Naumann, K., Fischer, A., Hofmann, I., Krauss, V., Phalke, S., Irmler, K., Hause, G., Aurich, AC., Dorn, R., Jenuwein, T., Reuter, G. (2005). Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis. EMBO J. 24(7):1418-29 (abstract)
 
Novatchkova, M., Bachmair, A., Eisenhaber, B., Eisenhaber, F. (2005). Proteins with two SUMO-like domains in chromatin-associated complexes: the RENi (Rad60-Esc2-NIP45) family. BMC Bioinformatics. 6:22 (abstract)
 
Novatchkova, M., Wildpaner, M., Schweizer, D., Eisenhaber, F. (2005). PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. Nucleic Acids Res. 33(Web Server issue):W121-5 (abstract)
 
O'Connor, E., Eisenhaber, B., Dalley, J., Wang, T., Missen, C., Bulleid, N., Bishop, PN., Trump, D. (2005). Species specific membrane anchoring of nyctalopin, a small leucine-rich repeat protein. Hum Mol Genet. 14(13):1877-87 (abstract)
 
Pelayo, R., Hirose, J., Huang, J., Garrett, KP., Delogu, A., Busslinger, M., Kincade, PW. (2005). Derivation of 2 categories of plasmacytoid dendritic cells in murine bone marrow. Blood. 105(11):4407-15 (abstract)
 
Peters, JM. (2005). Cyclin degradation: don't mes(s) with meiosis. Curr Biol. 15(12):R461-3 (abstract)
 
Pilat, S., Carotta, S., Schiedlmeier, B., Kamino, K., Mairhofer, A., Will, E., Modlich, U., Steinlein, P., Ostertag, W., Baum, C., Beug, H., Klump, H. (2005). HOXB4 enforces equivalent fates of ES-cell-derived and adult hematopoietic cells. Proc Natl Acad Sci U S A. 102(34):12101-6 (abstract)
 
Ricci, R., Eriksson, U., Oudit, GY., Eferl, R., Akhmedov, A., Sumara, I., Sumara, G., Kassiri, Z., David, JP., Bakiri, L., Sasse, B., Idarraga, MH., Rath, M., Kurz, D., Theussl, HC., Perriard, JC., Backx, P., Penninger, JM., Wagner, EF. (2005). Distinct functions of junD in cardiac hypertrophy and heart failure. Genes Dev. 19(2):208-13 (abstract)
 
Roldán, E., Fuxa, M., Chong, W., Martinez, D., Novatchkova, M., Busslinger, M., Skok, JA. (2005). Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavy-chain gene. Nat Immunol. 6(1):31-41 (abstract)
 
Ruocco, MG., Maeda, S., Park, JM., Lawrence, T., Hsu, LC., Cao, Y., Schett, G., Wagner, EF., Karin, M. (2005). I{kappa}B kinase (IKK){beta}, but not IKK{alpha}, is a critical mediator of osteoclast survival and is required for inflammation-induced bone loss. J Exp Med. 201(10):1677-87 (abstract)
 
Terme, M., Borg, C., Guilhot, F., Masurier, C., Flament, C., Wagner, EF., Caillat-Zucman, S., Bernheim, A., Turhan, AG., Caignard, A., Zitvogel, L. (2005). BCR/ABL promotes dendritic cell-mediated natural killer cell activation. Cancer Res. 65(14):6409-17 (abstract)
 
Vietor, I., Kurzbauer, R., Brosch, G., Huber, LA. (2005). TIS7 regulation of the beta-catenin/Tcf-4 target gene osteopontin (OPN) is histone deacetylase-dependent. J Biol Chem. 280(48):39795-801 (abstract)
 
Wagner, EF., Eferl, R. (2005). Fos/AP-1 proteins in bone and the immune system. Immunol Rev. 208:126-40 (abstract)
 
Yanagida, M., Nasmyth, K. (2005). Introduction: dissection and simplification of chromosome segregation. Philos Trans R Soc Lond B Biol Sci. 360(1455):481 (abstract)
 
Zenz, R., Eferl, R., Kenner, L., Florin, L., Hummerich, L., Mehic, D., Scheuch, H., Angel, P., Tschachler, E., Wagner, EF. (2005). Psoriasis-like skin disease and arthritis caused by inducible epidermal deletion of Jun proteins. Nature. 437(7057):369-75 (abstract)
 
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